PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF005100020CFD_t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 147aa    MW: 15760.7 Da    PI: 9.1153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF005100020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.66e-09127147222
                              --SS-EEEEEEE--TT-SS-E CS
                     WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                              +Dgy+WrKYGqK +  + fpr
  TRAES3BF005100020CFD_t1 127 SDGYQWRKYGQKRIMRTSFPR 147
                              7******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-8115147IPR003657WRKY domain
SuperFamilySSF1182902.22E-7120147IPR003657WRKY domain
PROSITE profilePS508119.465121147IPR003657WRKY domain
PfamPF031063.4E-6128147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQTQSRLIMN PNGGVTGYEP AATDEQHEAV LRELAHGHEL TAHLQAEALR ALHGQGQTEA  60
TAALILQEVS RAFTVCINIM GGSAPAATPT TPPPDAAAVV VTGAASARRP RDDGVPRKVT  120
VTSSPYSDGY QWRKYGQKRI MRTSFPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753928.11e-48PREDICTED: WRKY transcription factor SUSIBA2
TrEMBLA0A0C4B1411e-105A0A0C4B141_WHEAT; Uncharacterized protein
STRINGMLOC_3853.11e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]